miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|166133581|gb|FD566848.1|FD566848 TTTTTTTTTTTTTTTTTTCCTTGGGACATACGCTTGTTATAGCTTCGATTCCACTGTCTGATATCTTTTTGTAAGCTTTG
TCTGTGAAGCTTGAAAGGGCATAGAGGTTTAAGGTTTGCAAAGAGGAACACTTGTGTAGCACTTGAAGTAATCCATCATC
TGTGATCTTAACACACCTAGTGATGTTCAGCGACTCTAAGTCTTGATAACTTTCAGCTACTAGTTCCATACCTTTGTCGG
TTATGCTCTTGCAGCCACTTATGTTCAAATCAATGATGTTTCTGCAATTCTTGACTAGATGTCTAATACAATCATCAGTC
ACCCTCACGTTCCAGTAGATAGAGATAATTTTTAGCTTGGGACATACGCTTGTTATAGCTTCGATTCCACTGTCTGATAT
CTTTTGGCACCCATTCAGATTCAAGCATTCTAAGCTTGAAAGCGCATCATGACACTGGCTTTGCACAAGTTGAAAATGAG
TGTCGTCAACACCCTGGGAAAATTCAAGATTGATATGCTTCACTTGACAATATCTTTGCAAGGACAGAGCAGCTAAAAGC
CTGCCCCCTGCATTGGTCTTCTCACGCAAATCAATGTTCAGCCAGATGGAAGGGTAAGAGACGAGTGTGCGATAGAGCCA
GGGGCTAACGAGAAGGAGAGAAACCAAATCTTTCTGTGGCAATCTCGTGCTCACTATCCTCATCACGCTTGTTACTATCT
CTCTCCTCCACATCTCTTCTTCTTCCTCTTCCAACACTTTATTCGATTCCATGGTTCTCCAATCCAAGTTCAGCCCACTT
TTCGCCTTGAGACTAGAGTCTATCTTTAGAGCGAGTCGTGTCTCGACGCGTGGAACTTGA




Most similar to sp|Q8LB33|FB330_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8LB33|FB330_ARATH F-box protein At3g58530 OS=Arabidopsis
           thaliana GN=At3g58530 PE=2 SV=1
          Length = 353

 Score =  369 bits (946), Expect = e-101
 Identities = 188/238 (78%), Positives = 207/238 (86%)
 Frame = -2

Query: 772 MESNKVLXXXXXEMWRREIVTSVMRIVSTRLPQKDLVSLLLVSPWLYRTLVSYPSIWLNI 593
           ME+ KV        WRREIVTSVMR+VSTRLPQ DL+SLLLVSPWLYRTL+SYPSIWL I
Sbjct: 1   MEAKKVTEEEEET-WRREIVTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLTI 59

Query: 592 DLREKTNAGGRLLAALSLQRYCQVKHINLEFSQGVDDTHFQLVQSQCHDALSSLECLNLN 413
           +LRE TNAG RLLAALSL RY QVKHINLEF+QGV D+H +LV+++C DAL SLE LNLN
Sbjct: 60  NLREMTNAGDRLLAALSLPRYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLN 119

Query: 412 GCQKISDSGIEAITSVCPKLKIISIYWNVRVTDDCIRHLVKNCRNIIDLNISGCKSITDK 233
            CQKISD+GIEAITS+CPKLK+ SIYWNVRVTD  IR+LVKNCR+I DLN+SGCKS+TDK
Sbjct: 120 VCQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDK 179

Query: 232 GMELVAESYQDLESLNITRCVKITDDGLLQVLHKCSSLQTLNLYALSSFTDKAYKKIS 59
            M+LVAESY DLESLNITRCVKITDDGLLQVL KC SLQTLNLYALS FTDKAY KIS
Sbjct: 180 SMQLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKIS 237